Bioconductor Alternative Splicing

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2.7k

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sgseq splicing alternative splicing

updated 8.2 years ago by Leonard Goldstein ▴ 200 • written 8.2 years ago by vakul.mohanty ▴ 20

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1.5k

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rna-seq alternative splicing SGSeq

5.5 years ago andrea.bast • 0

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2.2k

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DEXSeq DESeq2 dexseq deseq2 alternative splicing

8.6 years ago Fahmi Nazarie • 0

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886

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sgseq alternative splicing rna seq

updated 4.4 years ago by Leonard Goldstein ▴ 200 • written 4.4 years ago by 116100016 • 0

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1.3k

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limma rna-seq alternative splicing

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by lirongrossmann ▴ 80

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1.0k

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aspli readCounts rna-seq alternative splicing AS

5.2 years ago fernandalpcosta ▴ 10

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1.2k

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maser R rMATs alternative splicing

5.7 years ago Reza • 0

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780

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rna seq SGSeq Alternative splicing

updated 4.6 years ago by Leonard Goldstein ▴ 200 • written 4.6 years ago by 116100016 • 0

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1.9k

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dexseq alternative splicing exon skipping

updated 9.1 years ago by Simon Anders ★ 3.7k • written 9.2 years ago by ebadr • 0

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1.1k

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deseq2 dexseq alternative splicing

updated 8.4 years ago by Michael Love 41k • written 8.5 years ago by sahiilseth • 0

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896

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R alternative splicing ASpli AsDiscover

5.4 years ago abdul rawoof ▴ 60

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942

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rnaseq alternative splicing ASpli

5.4 years ago nicolas.guyon2 • 0

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1.2k

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limma voom alternative splicing

8.2 years ago osa.zuta ▴ 40

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687

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.5 years ago noahhelton98 ▴ 20

14 results • Page 1 of 1

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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

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